Totally Science Gitlab: A Platform for Collaborative Science

Totally Science Gitlab is a platform for collaborative scientific research and development. It allows researchers to create, manage, and share projects, code, data, and publications securely and transparently. In this article, we will introduce the main features and benefits of Totallyscience Gitlab and show how it can help you accelerate your scientific workflow and improve the quality and reproducibility of your research outputs.

What is Science Gitlab?

Totally science Gitlab is a web-based platform that allows users to collaborate on scientific projects using Git, a version control system. Users can create, manage, and share repositories, code, data, and documentation. Totallyscience Gitlab also provides features such as issue tracking, code review, continuous integration and deployment, and wikis. Totally science Gitlab aims to facilitate open science and reproducible research by enabling users to publish their work under various licenses, link their projects to external platforms such as Zenodo and Figshare, and cite their work using DOIs.

What are the Benefits of Using Totally Science Gitlab

Totally science Gitlab is a platform that allows researchers and scientists to collaborate on projects, share code, data, and results, and manage their workflows. Totally science Gitlab offers several benefits for users, such as:

Version control: Users can easily track changes to their code and data, revert to previous versions, and easily merge branches. Version control helps users avoid losing or overwriting their work, ensuring reproducibility and research transparency.

Collaboration: Users can invite other researchers to join their projects, assign roles and permissions, and communicate through issues and comments. Collaboration helps users leverage the expertise and feedback of their peers and accelerate their research progress.

Integration: Users can integrate their projects with various tools and services, such as Jupyter Notebooks, Docker containers, Google Cloud, and more. Integration helps users access and use the resources they need for their research and streamline their workflows.

Security: Users can control the visibility and access of their projects and encrypt their data and code. Security helps users protect their intellectual property and comply with ethical and legal standards.

Hosting: Users can host their projects on Totallyscience Gitlab’s servers or their servers. Hosting helps users reduce the costs and complexity of maintaining their infrastructure and enjoy the reliability and performance of Totallyscience Gitlab’s servers.

Features of Totally Science Gitlab

Totallyscience Gitlab is a web-based service that provides a range of features to help you manage, collaborate, and publish your research. Here are some of the features that make Totallyscience Gitlab stand out from other platforms:

• Version control: You can use Git to track changes and revisions in your code, data, and documents. You can also create branches and merge requests to work on different aspects of your project without affecting the main version.
• Collaboration: You can invite other researchers to join your project and assign them roles and permissions. You can also communicate with them through issues, comments, and chat. You can also integrate your project with external services like Slack, Google Drive, and Dropbox.
• Publishing: You can easily publish your project as a website, a PDF, or a Jupyter Notebook. You can also link your project to a DOI or an ORCID to make it citable and discoverable. You can also export your project to platforms like GitHub, Zenodo, and Figshare.
• Reproducibility: You can use Docker and Kubernetes to create and run containers that ensure your project runs the same way on any machine. You can also use pipelines and workflows to automate tasks like testing, building, and deploying your project.
• Security: You can make your project public or private and control who can access and edit it. You can also use encryption, authentication, and backup to protect your data and code.

How To Use TotallyScience GitLab

To use TotallyScience GitLab, register for an account and join or create a project. You can also import existing projects from other platforms like GitHub or Bitbucket. Here are some basic steps to get started with TotallyScience GitLab:

– Go to https://totallyscience.gitlab.com, sign up with your email address, or log in with your existing account.

– Click on the green “New project” button on the top right corner of the screen. You can create a blank project, use a template, or import a project from another source.

– Give your project a name, description, and visibility level. You can also add tags, a license, and a README file. Click on “Create project” when you are done.

– You will see your project dashboard, where you can access various features and settings of your project. You can also clone your project to your local machine using the “Clone” button on the top right corner of the screen.

– Use the web editor or your preferred code editor on your local machine to make changes to your project files. You can also upload files from your computer or drag and drop them into the web editor.

– To save and share your changes, commit them to a branch and create a merge request. A branch is a copy of your project that you can modify without affecting the main branch (usually called “master” or “main”). A merge request is a request to merge your branch into another branch, usually the main branch.

– To create a branch, click on the “Branches” tab on the left sidebar of your project dashboard. Then click on the “New branch” button on the top right corner of the screen. Name your branch and select the branch you want to base it on. Click on “Create branch” when you are done.

– To create a merge request, click on the “Merge requests” tab on the left sidebar of your project dashboard. Then click on the “New merge request” button on the top right corner of the screen. Select the source branch (the one you created) and the target branch (the one you want to merge into). You can add a title, description, assignees, reviewers, labels, milestones, etc. Click on “Submit merge request” when you are done.

– Other members of your project team will review your merge request. They can comment, approve, or reject your merge request. You can change your merge request by pushing new commits to your branch or editing it online.

– Once your merge request is approved and there are no conflicts, you can merge it into the target branch by clicking the “Merge” button at the bottom of the screen. Your changes will be reflected in the target branch, and your source branch will be deleted (unless you choose to keep it).

How to Create A repository TotallyScience GitLab

A repository is a place where you can store and manage your files and projects. In TotallyScience GitLab, you can create a repository for your use or collaboration. To create a repository in TotallyScience GitLab, follow these steps:

1. Log in to your TotallyScience GitLab account and click on the green “New project” button on the top right corner of the screen.
2. Choose a name and a description for your repository. You can also select the visibility level (public, internal, or private) and add tags to categorize your project.
3. Click the “Create project” button to create your repository. You will be taken to the project overview page, where you can see the details of your repository and start adding files and branches.
4. Use the web interface or the command line to add files to your repository. To use the web interface, click the “+” icon on the top right corner of the screen and select “New File.” You can then type or paste your code into the editor and commit your changes. To use the command line, you need to clone your repository to your local machine using the URL provided on the project overview page. You can then use git commands to add, modify, and push your files to the remote repository.
5. You can use the web interface or the command line to create branches in your repository. To use the web interface, click the “Branches” tab on the left sidebar and click the “New branch” button. You can then enter a name for your branch and select the source branch from which you want to create it. To use the command line, you need to clone your repository to your local machine using the URL provided on the project overview page. You can then use git commands to create, switch, and push your branches to the remote repository.

Examples of Projects Using Totally Science Gitlab

Here are a few examples of projects that could utilize Totally Science GitLab:

Genomics Research:

A genomics research project could use Totally Science GitLab to manage and track changes in their genomic data analysis pipelines. Researchers can collaborate on developing and optimizing algorithms, storing and versioning large datasets, and documenting their workflows.

Neuroscience Data Analysis:

A neuroscience project could leverage Totally Science GitLab to organize and analyze brain imaging data. The platform can be used to share code for data preprocessing, perform statistical analyses, and collaborate on building machine learning models for brain image classification.

Climate Change Modeling:

Totally Science GitLab can be utilized for climate change modeling projects. Researchers working on climate simulations and modeling can use the platform to store and version control their code for running simulations, managing large datasets, and collaborating on model improvements.

Drug Discovery:

Pharmaceutical researchers can employ Totally Science GitLab to manage and track the development of new drugs. The platform enables version control of code for molecular dynamics simulations, machine learning models for virtual screening, and the sharing of data and results among team members.

Astrophysics Simulations:

Totally Science GitLab can be valuable for astrophysics projects involving simulations and data analysis. Researchers can utilize the platform to store and version control their simulation codes, collaborate on developing new models, and share results and visualizations.

Bioinformatics Pipelines:

Bioinformatics projects can benefit from Totally Science GitLab by using it to manage and share code for analyzing biological data. Researchers can collaborate on developing pipelines for tasks such as DNA sequencing analysis, transcriptomics, and protein structure prediction.

Managing Issues at TotallyScience GitLab

At TotallyScience, we use GitLab as our platform for collaborative software development. GitLab allows us to create, track, and resolve issues arising during development. Issues are tasks or problems that need to be addressed by the project team. This document will explain how to create, assign, label, comment, and close issues on GitLab.

• To create an issue, go to the project page on GitLab and click on the Issues tab. Then, click on the New Issue button. You will see a form where you can enter the title, description, assignee, labels, due date, and other issue details. The title should be concise and descriptive of the problem or task. The report should provide more details and context about the issue, such as the expected behavior, the actual behavior, the steps to reproduce, the screenshots, the logs, etc. The assignee is the person who is responsible for resolving the issue. You can assign yourself or someone else from the project team. The labels are tags that help categorize and filter the issues. You can use existing labels or create new ones. The due date is the deadline for resolving the issue. You can also link the issue to a milestone, a merge request, or another issue.
• To assign an issue, you can do it when you create it or edit it later. To edit an issue, go to the issue page and click on the Edit button. You will see the same form as when you created the issue. You can change any of the details of the issue, including the assignee. You can also unassign an issue if you want to remove the responsibility from someone.
• To label an issue, you can either do it when you create or edit the issue or use quick actions. Quick actions are commands you can type in the comment box of an issue to perform specific actions. For example, to add a label called bug to an issue, you can type /label ~bug in the comment box and submit it. To remove a label, you can type /unlabel ~bug. You can also use quick actions to assign, unassign, close, reopen, or move an issue.
• To comment on an issue, go to the issue page and type your message in the comment box at the bottom. You can use comments to communicate with other team members about the issue, such as asking questions, providing feedback, giving updates, etc. You can also use comments to mention other users by typing @ followed by their username. For example, to mention user JohnDoe in a comment, you can type @JohnDoe. The mentioned user will receive a notification about your comment.
• To close an issue, go to the issue page and click on the Close button. This means that the issue has been resolved or is no longer relevant. You can also close an issue by using a quick action in a comment. To close an issue with a comment, type /close followed by your message and submit it. For example, to close an issue with a comment saying “Fixed in merge request #123”, you can type /close Fixed in merge request #123.
• To reopen an issue, go to the closed issue page and click on the Reopen button. This means that the issue is still valid or needs more work. You can also reopen an issue by using a quick action in a comment. To reopen an issue with a comment, type /reopen followed by your message and submit it.

Merge Requests: A Beginner’s Guide

If you are new to collaborative software development, you may have heard of the term “merge request” and wondered what it means. A merge request, also known as a pull request, proposes changes to a shared codebase and gets feedback from other developers before integrating them.

A merge request typically consists of a branch, a copy of the original code with your modifications, and a target, the destination where you want to apply your changes. By creating a merge request, you can compare your branch with the target, see the differences, resolve conflicts, and request reviews from your teammates. Merge requests are essential for ensuring code quality, consistency, and collaboration.

To create a merge request, you need to follow these steps:

1. Fork the original repository, the online storage where the code is hosted. This will create a copy of the repository under your account, where you can make changes without affecting the original code.
2. Clone the forked repository to your local machine, where you write and edit your code. This will download a copy of the code to your computer, where you can use your preferred tools and environment.
3. Create a new branch from the main branch, which is the code’s default and most updated version. This will create a separate copy of the code where you can work on your feature or bug fix without interfering with the main branch.
4. Make your changes to the code in the new branch. This is where you implement your ideas, fix errors, add comments, and test your code.
5. Push your changes to the remote repository, which is the online storage where the code is hosted. This will upload your modified code to your forked repository, where others can access it.
6. Create a merge request from your branch to the target branch, which is usually the main branch of the original repository. This will open a web page where you can fill in the details of your merge request, such as the title, description, reviewers, labels, and milestones. You can also see your changes and how they compare to the target branch.
7. Wait for feedback from your reviewers, who are other developers who can approve or reject your merge request. They can also leave comments, suggestions, questions, or requests for changes to your code. You should respond to their feedback and make any necessary adjustments to your code.
8. Merge your branch into the target branch, the final step of integrating your changes into the shared codebase. You can do this by clicking on the “Merge” button on the web page of your merge request or by using a command line tool. This will apply your changes to the target branch and close your merge request.

Conclusion

In conclusion, Totallyscience Gitlab is a platform that allows researchers to collaborate on scientific projects, share data and code, and publish their results in a transparent and reproducible way. Totallyscience Gitlab aims to foster open science and innovation while providing quality assurance, peer review, and data management tools. Totallyscience Gitlab is free for public projects, offering paid plans for private projects and additional features. Whether you are a student, a professor, or a professional scientist, Totallyscience Gitlab can help you streamline your workflow and enhance your research output.

Brendan Hesse

I’m a writer, artist, and designer working in the gaming and tech industries. I have held staff and freelance positions at large publications including Digital Trends, Lifehacker, Popular Science Magazine, Electronic Gaming Monthly, IGN, The Xplore Tech, and others, primarily covering gaming criticism, A/V and mobile tech reviews, and data security advocacy.